Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
Nikos C Kyrpides
(1)
,
Philip Hugenholtz
(2)
,
Jonathan A Eisen
(3)
,
Tanja Woyke
(1)
,
Markus Göker
(4)
,
Charles T. Parker
(5)
,
Rudolf Amann
(6)
,
Brian J Beck
(7)
,
Patrick S G Chain
(8)
,
Jongsik Chun
(9)
,
Rita R Colwell
(10, 11)
,
Antoine Danchin
(12)
,
Peter Dawyndt
(13)
,
Tom Dedeurwaerdere
(14)
,
Edward F Delong
,
John C Detter
,
Paul de Vos
,
Timothy J Donohue
,
Xiu-Zhu Dong
,
Dusko S Ehrlich
(15)
,
Claire Fraser
(16)
,
Richard Gibbs
(17)
,
Jack Gilbert
(18)
,
Paul Gilna
,
Frank Oliver Glöckner
,
Janet K Jansson
,
Jay D Keasling
(19, 20, 21)
,
Rob Knight
(22)
,
David Labeda
,
Alla Lapidus
,
Jung-Sook Lee
,
Wen-Jun Li
(23)
,
Juncai Ma
,
Victor Markowitz
(20)
,
Edward R B Moore
,
Mark Morrison
(24, 25)
,
Folker Meyer
,
Karen E Nelson
,
Moriya Ohkuma
,
Christos A Ouzounis
,
Norman Pace
,
Julian Parkhill
,
Nan Qin
,
Ramon Rossello-Mora
,
Johannes Sikorski
,
David Smith
,
Mitch Sogin
,
Rick Stevens
,
Uli Stingl
,
Ken-Ichiro Suzuki
,
Dorothea Taylor
,
Jim M Tiedje
,
Brian Tindall
,
Michael Wagner
,
George Weinstock
,
Jean Weissenbach
(26)
,
Owen White
,
Jun Wang
,
Lixin Zhang
,
Yu-Guang Zhou
,
Dawn Field
,
William B Whitman
,
George M Garrity
,
Hans-Peter Klenk
(4)
1
DOE Joint Genome Institute [Walnut Creek]
2 UQ [All campuses : Brisbane, Dutton Park Gatton, Herston, St Lucia and other locations] - The University of Queensland
3 UC - University of California
4 Leibniz-Institut Deutsche Sammlung von Mikroorganismen und Zelllkulturen GmBH - DSMZ (GERMANY)
5 University of Utah
6 Max Planck Institute for Marine Microbiology
7 ATCC - American Type Culture Collection
8 LANL - Los Alamos National Laboratory
9 SNU - Seoul National University [Seoul]
10 CBCB - Center for Bioinformatics and Computational Biology [Maryland]
11 Johns Hopkins Bloomberg School of Public Health [Baltimore]
12 AMAbiotics SAS
13 UGENT - Universiteit Gent = Ghent University
14 UCL - Université Catholique de Louvain = Catholic University of Louvain
15 INRA - Institut National de la Recherche Agronomique
16 University of Maryland School of Medicine
17 HGSC - Human Genome Sequencing Center [Houston]
18 Department of Ecology and Evolution [Chicago]
19 DTU - Danmarks Tekniske Universitet = Technical University of Denmark
20 LBNL - Lawrence Berkeley National Laboratory [Berkeley]
21 SIAT - Shenzhen Institute of Advanced Technology [Shenzhen]
22 HHMI - Howard Hughes Medical Institute [Chevy Chase]
23 SYSU - Sun Yat-sen University [Guangzhou]
24 CSIRO - Commonwealth Scientific and Industrial Research Organisation [Canberra]
25 OSU - Ohio State University [Columbus]
26 GENOSCOPE - Genoscope - Centre national de séquençage [Evry]
2 UQ [All campuses : Brisbane, Dutton Park Gatton, Herston, St Lucia and other locations] - The University of Queensland
3 UC - University of California
4 Leibniz-Institut Deutsche Sammlung von Mikroorganismen und Zelllkulturen GmBH - DSMZ (GERMANY)
5 University of Utah
6 Max Planck Institute for Marine Microbiology
7 ATCC - American Type Culture Collection
8 LANL - Los Alamos National Laboratory
9 SNU - Seoul National University [Seoul]
10 CBCB - Center for Bioinformatics and Computational Biology [Maryland]
11 Johns Hopkins Bloomberg School of Public Health [Baltimore]
12 AMAbiotics SAS
13 UGENT - Universiteit Gent = Ghent University
14 UCL - Université Catholique de Louvain = Catholic University of Louvain
15 INRA - Institut National de la Recherche Agronomique
16 University of Maryland School of Medicine
17 HGSC - Human Genome Sequencing Center [Houston]
18 Department of Ecology and Evolution [Chicago]
19 DTU - Danmarks Tekniske Universitet = Technical University of Denmark
20 LBNL - Lawrence Berkeley National Laboratory [Berkeley]
21 SIAT - Shenzhen Institute of Advanced Technology [Shenzhen]
22 HHMI - Howard Hughes Medical Institute [Chevy Chase]
23 SYSU - Sun Yat-sen University [Guangzhou]
24 CSIRO - Commonwealth Scientific and Industrial Research Organisation [Canberra]
25 OSU - Ohio State University [Columbus]
26 GENOSCOPE - Genoscope - Centre national de séquençage [Evry]
Edward F Delong
- Fonction : Auteur
John C Detter
- Fonction : Auteur
Paul de Vos
- Fonction : Auteur
Timothy J Donohue
- Fonction : Auteur
Xiu-Zhu Dong
- Fonction : Auteur
Paul Gilna
- Fonction : Auteur
Frank Oliver Glöckner
- Fonction : Auteur
Janet K Jansson
- Fonction : Auteur
David Labeda
- Fonction : Auteur
Alla Lapidus
- Fonction : Auteur
Jung-Sook Lee
- Fonction : Auteur
Juncai Ma
- Fonction : Auteur
Edward R B Moore
- Fonction : Auteur
Folker Meyer
- Fonction : Auteur
Karen E Nelson
- Fonction : Auteur
Moriya Ohkuma
- Fonction : Auteur
Christos A Ouzounis
- Fonction : Auteur
Norman Pace
- Fonction : Auteur
Julian Parkhill
- Fonction : Auteur
Nan Qin
- Fonction : Auteur
Ramon Rossello-Mora
- Fonction : Auteur
Johannes Sikorski
- Fonction : Auteur
David Smith
- Fonction : Auteur
Mitch Sogin
- Fonction : Auteur
Rick Stevens
- Fonction : Auteur
Uli Stingl
- Fonction : Auteur
Ken-Ichiro Suzuki
- Fonction : Auteur
Dorothea Taylor
- Fonction : Auteur
Jim M Tiedje
- Fonction : Auteur
Brian Tindall
- Fonction : Auteur
Michael Wagner
- Fonction : Auteur
George Weinstock
- Fonction : Auteur
Owen White
- Fonction : Auteur
Jun Wang
- Fonction : Auteur
Lixin Zhang
- Fonction : Auteur
Yu-Guang Zhou
- Fonction : Auteur
Dawn Field
- Fonction : Auteur
William B Whitman
- Fonction : Auteur
George M Garrity
- Fonction : Auteur
Hans-Peter Klenk
- Fonction : Auteur
- PersonId : 1401512
Résumé
Microbes hold the key to life. They hold the secrets to our past (as the descendants of the earliest forms of life) and the prospects for our future (as we mine their genes for solutions to some of the planet's most pressing problems, from global warming to antibiotic resistance). However, the piecemeal approach that has defined efforts to study microbial genetic diversity for over 20 years and in over 30,000 genome projects risks squandering that promise. These efforts have covered less than 20% of the diversity of the cultured archaeal and bacterial species, which represent just 15% of the overall known prokaryotic diversity. Here we call for the funding of a systematic effort to produce a comprehensive genomic catalog of all cultured Bacteria and Archaea by sequencing, where available, the type strain of each species with a validly published name (currently∼11,000). This effort will provide an unprecedented level of coverage of our planet's genetic diversity, allow for the large-scale discovery of novel genes and functions, and lead to an improved understanding of microbial evolution and function in the environment.
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